PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227623.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 366aa    MW: 37127.3 Da    PI: 8.2778
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227623.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.41.8e-681473073153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 
                     + t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq +  aa   a +++ +++++k++r l  ++q+++s+t++s++++
  XP_008227623.2 147 ASTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSGAAGGGAGSNSgSTSSAKKPR-LIGASQTTTSHTSTSNTTP 240
                     5789************************************************99999999998884445555555.5699999************ PP

          DUF702  97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     +++ +tss          lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e
  XP_008227623.2 241 PRSYDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGVE 307
                     ******999********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-62149307IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.9E-27151193IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.0E-30259306IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAGMPINAST NPATALCVGV GVGVIPLLTT TPCLAPPNIS NVDDDEDNNA HTPTGMSMGM  60
GMGMGMGMGM GMSMSMGMMS SGQHRNNRTA GGGGIQLWQQ PQPHFFKKTP HDLAATSLGG  120
THLVQGGGGG GVGNNVMNSG SAAASGASTM TCQDCGNQAK KDCTHRRCRT CCKSRGFDCA  180
THVKSTWVPA ARRRERQLMS GAAGGGAGSN SGSTSSAKKP RLIGASQTTT SHTSTSNTTP  240
PRSYDTSSSH QDAGFKESLP GQVRAPAVFK CVRVTAVEDG DDEYAYQAVV KIGGHVFKGF  300
LYDQGVEGRE GFPNISELHL GGGGGTSGGG NGGRNGASSP ILDTSDVYGA SSGGLLGGSN  360
FGNPIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227623.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK96e-87LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLM5WND71e-168M5WND7_PRUPE; Uncharacterized protein
STRINGGLYMA02G44860.21e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-75Lateral root primordium (LRP) protein-related